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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions ( ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs4803480 1 rs7255679 chr19:42063981 CEACAM21 chr19:42055886-42093196:+ 0.35 7.77 7.32E-14 Schizophrenia
BLCA cis rs7246967 1 rs7257127 chr19:23056699 ZNF492 chr19:22817126-22850472:+ -0.31 -4.16 3.95E-5 Bronchopulmonary dysplasia
BLCA cis rs7258015 1 rs7257871 chr19:10449252 YIPF2 chr19:11033446-11039357:- 0.24 3.9 0.000114 Systemic lupus erythematosus or rheumatoid arthritis
BLCA cis rs7258015 1 rs7258015 chr19:10449358 YIPF2 chr19:11033446-11039357:- 0.24 3.9 0.000114 Systemic lupus erythematosus or rheumatoid arthritis
BLCA cis rs12220777 1 rs72644213 chr10:81783660 LOC219347 chr10:81805991-81838949:- 0.35 4.14 4.36E-5 Chronic obstructive pulmonary disease-related biomarkers
BLCA cis rs7112513 1 rs72645460 chr11:116771375 PCSK7 chr11:117075789-117102811:- 0.45 5.5 7.0E-8 Protein quantitative trait loci
BLCA cis rs4372836 1 rs72782294 chr2:28953390 TRMT61B chr2:29072690-29093175:- 0.29 5.09 5.59E-7 Body mass index
BLCA cis rs7428 1 rs72840063 chr2:85550396 TGOLN2 chr2:85545147-85555374:- -0.22 -5.33 1.66E-7 Ear protrusion
BLCA cis rs41266839 1 rs72843784 chr6:26498758 BTN3A2 chr6:26365398-26378546:+ -0.77 -7.63 1.86E-13 Schizophrenia
BLCA cis rs1930961 1 rs7285549 chr22:25874580 CRYBB2 chr22:25615612-25627836:+ 0.93 9.86 1.33E-20 Bipolar disorder with mood-incongruent psychosis
BLCA cis rs13053817 1 rs7290684 chr22:29857664 NIPSNAP1 chr22:29950800-29977144:- 0.28 4.03 6.64E-5 Carotid atherosclerosis in HIV infection
BLCA cis rs13053817 1 rs7290855 chr22:29852474 MTMR3 chr22:30279158-30426855:+ 0.25 3.95 9.17E-5 Carotid atherosclerosis in HIV infection
BLCA cis rs13053817 1 rs7290855 chr22:29852474 NIPSNAP1 chr22:29950800-29977144:- 0.27 3.85 0.000137 Carotid atherosclerosis in HIV infection
BLCA cis rs732528 1 rs72929710 chr18:48372427 MRO chr18:48321491-48351754:- 0.25 4.42 1.29E-5 Entorhinal cortical thickness
BLCA cis rs732528 1 rs72929734 chr18:48381990 MRO chr18:48321491-48351754:- 0.25 4.39 1.5E-5 Entorhinal cortical thickness